Using PharmCAT

• Running PharmCAT
• Running PharmCAT in Docker
• Running the VCF Preprocessor

Modules

PharmCAT is a tool that is comprised of multiple modules. For an explanation of the modules and why it’s organized this way, please read the methods section.

Contributing

We welcome contributions from anyone willing to help improve PharmCAT.

If you notice a bug in PharmCAT, have an idea for a new feature, or just have a question about how PharmCAT works, please submit an issue in GitHub.

If you want to make a code contribution to the project please checkout the code repo and read the developer wiki for information about our development process.

Important Links & Data

• CPIC Site
• CPIC Guideline Publications
• PharmGKB Site
• List of PharmGKB clinical guideline annotations

Meow

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Table of contents

• Running PharmCAT
• Docker
• VCF Preprocessor
• Multi-Sample Analysis
• Calling CYP2D6

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